PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G380000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 726aa    MW: 79942.1 Da    PI: 6.5647
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G380000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.72.1e-48161561128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.......kvkaeekew.yfFskrdkkyatgkrknratk 79 
                         lp+GfrFhPtdeel+v+yL+k+++++      +   vi+evdiyk++Pw+Lp+       +  ++++e+ yfFs+rd+ky++g r+nra+ 
  Brast01G380000.1.p  16 LPAGFRFHPTDEELIVHYLRKRASSSAsassPPWPGVIAEVDIYKLDPWELPSsneqlgnN-GSTNNECmYFFSPRDRKYPNGVRPNRAAG 105
                         799*******************999885554444559**************9546655432.22334555********************* PP

                 NAM  80 sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         sgyWkatg+dk+++s+  +g +vg+kk Lvfy+gr pkg kt+W+mheyrl
  Brast01G380000.1.p 106 SGYWKATGTDKPIVSSssQGVVVGVKKALVFYQGRPPKGIKTNWIMHEYRL 156
                         **************98777788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5413166IPR003441NAC domain
PROSITE profilePS5100554.68716227IPR003441NAC domain
PfamPF023655.2E-2517156IPR003441NAC domain
SuperFamilySSF1019411.83E-54215227IPR003441NAC domain
SuperFamilySSF503704.34E-22570724IPR000772Ricin B, lectin domain
Gene3DG3DSA:2.80.10.501.1E-5576723No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MTIEVQQQQQ RRGSQLPAGF RFHPTDEELI VHYLRKRASS SASASSPPWP GVIAEVDIYK  60
LDPWELPSSN EQLGNNGSTN NECMYFFSPR DRKYPNGVRP NRAAGSGYWK ATGTDKPIVS  120
SSSQGVVVGV KKALVFYQGR PPKGIKTNWI MHEYRLADAR PHAYRPPPTM RSSSSSSSSS  180
MRLQISTPTV NLLQHACIDT SMLDIFHDFS PACMQLDDWV LCRIYKKPDP QLSQLLLHHD  240
HQLPSSSSMD SQQQQQHQQD HYDSSSSTSR MPMPMPMSMS MPRPPSISDY LEDYSAVSHL  300
FDTLPPPDTG AGFVLSDDEA STTRKRDNSD NGGVVDTMRA SKRSMFGPDQ LTMNSNFSLF  360
GPDQHQLLPA NSSKDRISTS ISIPPRSSKP IMDYPHRHGH GHGRRDDDDD SDDRRGPAPA  420
YGHQDPYDAP PPSYGRAPAD PYDAPPPSYG RAPADPYGHP PAEPYGRAPA DAYGRVDDDG  480
YGRRAPPPSY GHGGGRDDVY GGRAPPPAYG RDDDGGGYGG RAPAPAYGNV VHVSHESGEE  540
DRPHYGGGSG YGHETRPHQG GGGGGGGPPP ARQQTFRIVC KAGEDGFSLA ARDGKVCLVR  600
TDRDDDAQHW IKDMKYSTRV KDEEGYPAIA LVNKATGEAL KHSLGQSHPV RLASYNPEYM  660
DESLLWTESR DVGEGYRCIR MVNNIYLNFD ALHGDKDHGG VRDGTTLVLW EWCEGDNQRW  720
KIVAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-501622717165NO APICAL MERISTEM PROTEIN
1ut4_B6e-501622717165NO APICAL MERISTEM PROTEIN
1ut7_A6e-501622717165NO APICAL MERISTEM PROTEIN
1ut7_B6e-501622717165NO APICAL MERISTEM PROTEIN
3swm_A6e-501622720168NAC domain-containing protein 19
3swm_B6e-501622720168NAC domain-containing protein 19
3swm_C6e-501622720168NAC domain-containing protein 19
3swm_D6e-501622720168NAC domain-containing protein 19
3swp_A6e-501622720168NAC domain-containing protein 19
3swp_B6e-501622720168NAC domain-containing protein 19
3swp_C6e-501622720168NAC domain-containing protein 19
3swp_D6e-501622720168NAC domain-containing protein 19
4dul_A6e-501622717165NAC domain-containing protein 19
4dul_B6e-501622717165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925731e-172FP092573.1 Phyllostachys edulis cDNA clone: bphylf053l12, full insert sequence.
GenBankFP0952791e-172FP095279.1 Phyllostachys edulis cDNA clone: bphyem117i20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565352.11e-153PREDICTED: NAC transcription factor 29-like
TrEMBLI1HC421e-153I1HC42_BRADI; Uncharacterized protein
STRINGBRADI2G03467.11e-152(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-54NAC domain containing protein 25